Βιο-Πληροφορική
Ανάλυση Γονιδιώματος
- Blast with Microbial Genomes @ NCBI
- SALSA Αναζήτηση DNA και πρωτεϊνικών αλληλουχιών σε βάσεις δεδομένων ολοκληρωμένων γονιδιωμάτων @Νορβηγία
- COG Clusters of Orthologous Groups @ NCBI
- ORF Finder @ NCBI
Εξυπηρετητές πολλαπλών υπηρεσιών
- BCM Search Launcher @ Human Genome Center, Baylor College of Medicine, Houston TX
- embNet.org Part of the Swiss Institute of Bioinformatics
- GenomeNet @ Kyoto University, Japan
- The Biology WorkBench @ SDSC
- IDEAS Integrated Database and Extended Analysis System for Nucleic Acids and Proteins
- ANTHEPROT (ANalyse THE PROTein)
Μηχανές Αναζήτησης Ομολογιών
- BLAST search page @ GenomeNet, Kyoto, Japan
Ευθυγραμμίσεις
- BOXSHADE 3.21 Pretty Printing and Shading of Multiple-Alignment files
- CLUSTALW @ PBIL, France
- Consensus @ the Bork group, EMBL
- Tools for Alignment at the Bork group
- Divide-and-Conquer Multiple Sequence Alignment for high quality simultaneous multiple sequence alignments
- DIALIGN 2 especially suited to detect local similarities among distantly related sequences
- ALIGN Compendium of Protein Sequence Alignments
- CINEMA Colour INteractive Editor for Multiple Alignments
- LalnView @ PBIL
- Match-Box Web Server 1.2 multiple sequences alignment of proteins
Μοτίβα και αναζήτηση
- MOTIF Searching Protein Sequence Motifs
- PRINTS Protein Motif Fingerprint Database
- Protein Functional Analysis @ BMERC
- ScanProsite Protein against PROSITE
Τομείς
- Paircoils predict the location of coiled-coil regions
- PROSITE Dictionary of protein sites and patterns
Φυλογενετική ανάλυση
- Taxonomy and Systematics @ Univ of Glasgow
- NJplot for parsimony, distance or maximum likelihood trees
- PHYLIP a package of programs for inferring phylogenies
- PUZZLE Tree reconstruction for sequences by quartet puzzling and maximum likelihood
- Phylogenetic Tree prediction Putative phylogenetic trees prediction for sequence multiple alignment by cluster and topological algorithms
Δομή
- The Dali server comparing protein structures in 3D @ EBI
- NDB Biological Structure Resource @ Rutgers Univ
- SCOP Structural Classification of Proteins
- FSSP - Fold classification based on Structure-Structure alignment of Proteins
- RasMol Home Page to display molecular structure
- NNPREDICT Protein Secondary Structure Prediction
Μεταγραφή
- DPInteract DNA-Proteins interactions db
Σύστημα Αναφοράς Ακολουθιών και Ανάκτησης
- Entrez The NCBI WWW Entrez Browser
- Sequence Retrieval System- SRS Network Browser for Databanks in Molecular Biology (@EBI)
- PROSITE Dictionary of protein sites and patterns
- Query Databases @ EBI
- DBGET Integrated Database Retrieval System @ GenomeNet, Japan
Γονίδια
- GeneMark @ EBI
DNA
- Correspondence Analysis of Codon Usage @ Oxford, UK
- RepeatMasker screens DNA against a library of repetitive elements and returns a masked query sequence ready for database searches
- dbEST Database of Expressed Sequence Tags @ NCBI
RNA
- ESSA an integrated and interactive computer tool for analyzing RNA secondary structure
Γενικά
- PSORT Prediction of Protein Sorting Signals and Localization Sites in AminoAcid Sequences
- Sequin for submitting entries to the GenBank, EMBL, or DDBJ sequence databases
Σύνδεσμοι
- The BioCatalog a software directory @ EBI